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TTPM biopsies were conducted using a method previously described, with cores taken every 5 mm throughout the prostate using a template grid (Fig. 1) [18].
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The biopsy was conducted using the SmartStep™ technique (General Electric, Milwaukee, WI, USA).
Differential expression between MDS biopsy samples and control samples were conducted using MultiRankSeq [ 66], which is based on the combination of results from three distinct RNA-seq analysis packages: DESeq [ 67], edgeR [ 68], and baySeq [ 69].
All analyses were conducted using MetaWin [30].
Analyses were conducted using Statistica 6.0 (StatSoft).
All analyses were conducted using R [53].
Most experiments were conducted using line 86.
BI analyses were conducted using MrBayes 3.1 [3.1.
Analyses were conducted using Polo Plus [49].
Imputations were conducted using two methods.
Experiments were conducted using two photo-samples.
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