Exact(21)
The Mouse Tumor Biology Database (MTB; http://tumor.informatics.jax.org) is designed to facilitate use of mouse models of human cancer by providing detailed histopathologic and molecular information on lymphoma subtypes, including expertly annotated, on line, whole slide scans, and providing a repository for storing information on and querying these data for specific lymphoma models.
In short, in the first step, we extracted existing knowledge from a disease chemical biology database to generate compound-specific human protein networks.
Sequences were processed by using ClustalW2 software (www.ebi.ac.uk/Tools/clustalw2/index.html) and the GenBank/European Molecular Biology database library (http://blast.ncbi.nlm.nih.gov/Blast.cgi).nih.gov/Blast.cgi
These databases include the University of Minnesota Biocatalysis/Biodegradation database (UM-BBD), a database of biodegradative oxygenases (OxDBase), Biodegradation Network-Molecular Biology database (Bionemo), MetaCyc, and BioCyc.
The Mouse Genome Database, the Gene Expression Database and the Mouse Tumor Biology database are integrated components of the Mouse Genome Informatics (MGI) resource (http://www.informatics.jax.org).org
The amino acid sequences of all the studied proteins, except silicase and silacidins, were taken from the computational biology database server, UniProt (release 2012_10, http://www.uniprot.org).org
Similar(39)
Synthetic biology databases have collected numerous biobricks to accelerate genetic circuit design.
For optimal use, these data have been compiled and organized in different kinds of Molecular Biology Databases (MBDBs).
As more information is getting accumulated in plant biology, databases are being created to make the information publically available, for easy access and analysis.
There are ∼1100 molecular biology databases dispersed throughout the Internet.
We used protein sequences from UniProt (16) as a seed to retrieve β-lactamases from existing primary molecular biology databases.
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