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BLAST [ 7] remains the gold standard computer program for approximate biological string matching.
This feature can be a reflection of a biological string which is similar to PFH and can be proven with spatial studies including brain imaging.
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Unusually large mitochondria are a rather scarce feature in normal biological tissue and string-like giant mitochondria have hitherto not been reported in animals.
Until now, C-ImmSim worked by using algorithms that represent the biological complexity using bit strings.
Because strings within biological query sets can often contain similar k-mers, we estimate a >5-fold speed increase.
Although rbcL was used in hundreds of phylogenetic studies, only in a small fraction of them was it treated as a biological molecule, not as "strings of anonymous nucleotides, without function" [ 8].
That subset was clustered again according to biological processes (GOTERM_BP_FAT) and uploaded to STRING 9.1 (string-db.org).
The constantly growing pool of string data, especially biological sequences, requires us to build suffix trees for much larger strings.
Among the top ten GO categories overrepresented for genes from the String network, GO biological processes associated with the response to stimuli, immune processes, viral processes, and multi-organism processes were found.
Pairwise sequence alignments for mapping were performed using Biostrings (Pages H., Aboyoun P., Gentleman R. and DebRoy S. Biostrings: String objects representing biological sequences, and matching algorithms. R package version 2.34.1).
Biological cells are defined by strings of DNA known as a chromosome.
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