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Searching for homologues has become a routine operation of biological sequences in 4 × 4 combination with different subsequence (word size).
Searching for homologues had become a routine operation of biological sequences in 4 × 4 combination with a different subsequence (word size).
We have conducted a comprehensive assessment on the performance and sensitivity-specificity of iTriplet in analyzing artificial and real biological sequences in various genomic regions.
There are other problems linked to the use of biological sequences in phylogenetic analysis, including sampling of representative sequences, biological processes such as lateral gene transfer, fusion events and recombination (see Brocchieri et al [ 5] for a review).
The embedding process entails the construction of vectors representing biological sequences in such a way that the distances between those vectors approximate the dis-similarities between the sequences themselves.
When gamma is supported, the shape parameter of the gamma distribution (0.1-3.0 0.1-3.0sistent with those found in biologiconsistentces in general [ 29] and with thosehape parameter 1.83 obtained foundthe Pfam SH2 domain seed alignment in particular.
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It aims at predicting 3D models from a biological sequence in order to discover new drugs.
Motivation: Many analyses in modern biological research are based on comparisons between biological sequences, resulting in functional, evolutionary and structural inferences.
We have taken advantage of fact that there are a few papers associated to the biological sequences stored in NCBI.
Comparative analysis is a powerful approach to extract functional or evolutionary information from biological sequences (reviewed in [ 1- 3]).
During the past 15 years, the number of biological sequences appearing in patent documents has been increasing constantly (3).
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