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In total, nine GO biological processes were obtained (Fig. 2).
Cell motility only concerned the set of 74 genes, whereas the other biological processes were obtained with both 74 and 44 gene sets.
Plant GO-slims for all three independent GO categories namely, cellular components, molecular functions and biological processes were obtained from all GO terms associated with the BLASTx gene annotation list by using the GO slim viewer from the AgBase web server ([ 56]; http://www.agbase.msstate.edu).edu
Plant GO-slims for all three independent GO categories namely, cellular components, molecular functions and biological processes were obtained from all GO terms associated with the BLASTx gene annotations using the GO slim viewer from the AgBase web server ([ 85]; http://www.agbase.msstate.edu).edu
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Information on biological processes was obtained from the Gene Ontology (GO) database [ 19] for the top up- and down-regulated genes identified by the statistical approach (Tables 2 and 3).
The function and/or biological process were obtained from the UniProt database [ 19].
The biological processes categories were obtained from the GOA database.
Statistically-significant biological process terms were obtained with Fisher's Exact Test (p≤0.01) using PathwayStudio® (Ariadne Genomics, Inc, Rockville, MD, USA) [27], [28].
Overrepresented biological process categories were obtained after FDR correction, with a significance level of 0.05.
"Biological Process" terms were obtained and significance values for enrichment were calculated using 'classic' Fishers' exact test, implemented in TopGO.
Consequently, the photocatalytic and biological processes were combined.
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