This result suggests that the most significant change occurred in the fungal metabolic profile, although other multiple biological processes were also involved in response to cultivations.
Several genes involved in other important biological processes were also identified.
Some biological processes were also increased in the A. viridis dataset compared with N. vectensis: secretion (0.81 vs 0.36%) and catabolism (0.65 vs 0.26%).
In addition, three LEA proteins (Q8GV49, Q8GV47, and Q03967), four serpins (C0LF32, H9AXB3, Q41593, and Q9ST57), and Hsp90 (F4Y591), which participate in defense pathways and other various biological processes, were also phosphorylated.
Subject matter experts in lung, COPD, and network biology, as well as experts in other related biological processes, were also invited to guide the discussions and to provide expert feedback of missing or misrepresented signaling.
In a recent study of DMSO effects on gene expression in zebrafish embryos, altered gene expression in the context of a range of biological processes were also observed at concentrations well below the 1% solvent level often employed in toxicity tests (Turner et al., 2012).
Since the interactions among these biological processes are also complex as those between cell cycle and epigenetic regulation mentioned above, the future study on how EMT/MET contributes to cell fate conversions should not be limited in one or few biological processes.
We found that components participating in these biological processes are also enriched with unstructuredness.
In addition, binding, biological regulation, and developmental processes were greatly increased in the down-regulated SM genes, indicating that genes involved in these biological processes are also greatly down-regulated in the smDicer KO SMCs (Figure 5B).
These biological processes are also involved in telomere shortening (von Zglinicki 2002).
Interestingly, these biological processes are also mainly altered in two target organs (e.g. cell cycle and cell proliferation).
