Sentence examples for biological processes compiled by from inspiring English sources
The gene sets from the C2 data base are separated in 2 categories: CP canonical pathways- canonical representations of biological processes compiled by domain experts) and CGP (chemical and genetic perturbations- gene set representing genes induced or repressed by the perturbation) (http://www.broad.mit.edu/gsea/msigdb/collections.jsp C2).jsp C2
We focus on the dataset that represents canonical representations of 633 biological processes compiled by domain experts (c2.cp, version2.5).
These gene sets represent well-described biological processes compiled by domain experts, which include gene sets derived mainly from BioCarta pathway database [ 34], KEGG pathway database [ 35], and Reactome pathway database [ 36].
For each GO categories, molecular function, cellular component, and biological process, we compiled GO terms of the same ontological level in each species.
These canonical representations of biological pathways or processes have been compiled by domain experts and curated from several online databases (BioCarta, Gene Arrays, BioScience Corp, KEGG, Reactome, Sigma-Aldrich Pathways, Signal Transduction Knowledge Environment, Signaling Gateway).
Biological processes represented by the differentially expressed genes were compiled using the Database for Annotation, Visualization and Integrated Discovery [DAVID 2.1 (http://apps1.niaid.nih.gov/david/); Dennis et al. 2003].
As an initial assessment of the biological validity of the data, we compiled a list of biological processes, as defined by the Gene Ontology Consortium, likely to be specific to one cell type or the other, using the search terms "neuron", "neurotransmitter" and "synapse" plus "endothelial", and "angiogenesis".
Biological processes are abbreviated by BP, molecular functions by MF.
Biological processes altered by CHI treatment.
Biological processes altered by SA treatment.
