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The reactor is modeled as a nonlinear biological compartment system with 13 states and 51 parameters.
Effect models translate a concentration or body burden in a biological compartment to an effect on either an organism, a population, a community, an ecosystem, a landscape, or the entire ecosphere.
Surface sediment was first sampled at different periods of the year to assess the importance of the biological compartment (particularly metazoan meiofauna) and its relation to seasonally varying particulate matter input to the sea floor (estimated by measuring surface sediment particle size and porosity, as well as chloroplastic pigments, organic carbon, nitrogen and calcium carbonate contents).
One can literally follow the mass identities into any biological compartment that may or may not be related by biological function or structure to adjacent compartments.
Interestingly, a large contingent of oncogenes – ERBB3, JAK2, MAP2K1, MAPK8 – are clearly downregulated in the crypts, while their expression levels diminish considerably in the villi, indicating that these genes turn "off" during the crypt-to-villus transition – a well-known feature of this biological compartment [19].
To assess the advantage of a biological compartment model, we tested a non-biological model.
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The calibrated model was able to adequately describe the dynamics of most of the simulated biological compartments of a stream.
These descriptors were developed by the panel during preliminary training sessions, and consisted in definitions of various biological compartments inside the tubers.
designed to work in specific sites inside cells is complicated as macromolecules typically have access to fewer biological compartments than small molecules.
In this study, the Aquatox Model was used to simulate biomass dynamics of various biological compartments in artificial streams designed for measuring the effects of pollutants on aquatic communities.
Schepartz's research has contributed to and shaped thinking in multiple areas, including the molecular mechanisms of protein-DNA recognition and transcriptional activation; protein design and engineering and their application to synthetic biology; and the mechanisms by which both molecules and molecular information are trafficked between biological compartments.
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