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Protein data from biological and technical replicate LC-MS/MS MudPIT runs were combined and expression differences were normalized based on the CipA scaffoldin protein across different comparisons (Figures 4, 5, 6).
All data were averaged from both biological and technical replicate experiments for each cell line before clustering.
Coverage plots have a solid line if the exon was detected in the corresponding biological and technical replicate and a blank space if the exon was not present.
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There were three biological and technical replicates respectively.
Three biological and technical replicates were done for each sample.
Biological and technical replicates were done in triplicate.
Treatments are fixed effects, whereas biological and technical replicates are random effects.
The resulting condition tree (Fig. 4) revealed similar expression levels between biological and technical replicates, highlighting the minimal inter- and intra-array hybridization variation.
Three biological and technical replicates were analyzed.
All experiments were performed in three biological and technical replicates.
Three independent biological and technical replicates were performed.
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