Sentence examples for bio sequence from inspiring English sources
An inversion and a translocation are important in bio sequence analysis and motivate researchers to consider the sequence alignment problem using these operations.
To create multiple alignments, we used MAFFT on a CLC Bio Sequence Viewer (http://www.clcbio.com/, last accessed May 1 , 2014.
Dealing with a heterogeneous population and maintaining a balance between a challenging course and realistic expectations will always be an issue with an introductory math for bio sequence.
In particular, we consider three different gap cost models for the edit-distance that are crucial for finding a proper alignment between two bio sequences: the linear, affine and concave models.
Furthermore, mining association rules in a large database, when applied on a bio-sequence data set, is generally medically irrelevant and difficult to analyze.
Apriori and its variants (Apriori-Hybrid [1], DHP [30]) show reliable performance on sparse databases with simple itemsets such as market databases; however, on complex databases such as those consisting of bio-sequences and telecommunication networks, they typically generate numerous candidates or require several database passes.
A bio-sequence can be characterized by a vector consisting of frequencies of the 1364 k-mer (k = 1, 2, 3, 4, 5) strings.
In the case of textual bio-sequence comparison (such as comparison of 1-D protein sequences), we often prefer to use the string alignment score that takes indels into account in comparing two bio-sequences, rather than to use the Hamming distance.
The sequences obtained were trimmed using the Bio Edit Sequence alignment editor software (Ibis Biosciences, Carlsbad, CA, USA).
All sequences were aligned with ClustalW using Bio edit sequence alignment editor 7.0.5.3 software and primers were designed with the help of Primer3 software (http://frodo.wi.mit.edu/).edu/
PCR product sequences were aligned with sequences of the three genes, downloaded from GenBank of NCBI or MaizeGDB, using CLC genomics workbench (CLC Bio, Denmark) sequence analysis software.
