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Mercator functional categories that are easily visualized as MapMan bins were annotated for all gene models.
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The coverage and quality of the protein-coding sequences was heterogeneous across the 332 bins that we analyzed: 63 bins could only be annotated with fewer than 10 protein families, while the remaining bins were annotated with 276 different protein families on average.
These analyses revealed six examples of chromosome-wide AD (Table S1 ), where >50% of bins were annotated as AD or LD.
For this, we defined genome-specific module weights, which corresponded to the fraction of the protein families of a module that were annotated for a certain genome or taxonomic bin (completeness scores).
The representative sequences from each cluster were annotated for Carbohydrate-active Enzymes (CAZy) using the CAZy Analysis Toolkit (CAT) (http://mothra.ornl.gov/cgi-bin/cat.cgi; Pfam rule based annotations) [ 53].
No changes were annotated for this protein.
Image quality is annotated for each image.
In Uniprot this information is annotated for each sequence entry.
All data was annotated for events as defined previously.
In High Five transcriptome, 13,447 transcripts have been annotated for GO terms and 13,459 have been annotated in EggNOG database.
Of the 1,496 genes, 487 were annotated into the "not assigned" bin.
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