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Alanine scanning point mutagenesis of CTAD revealed that CTAD-Val was the most significant residue for CTAD binding, with a 2-fold increase in the KM CTAD) for the CTAD-Val → Ala variant.
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This Kd value was measured in the absence of substrates, but ITC experiments in the presence of substrates revealed that 11 enables pABA to bind DHPS with a 2-fold increase in binding affinity.
These conditions showed a greater level of protein-DHP-1 binding, with a 5-fold increase compared to controls.
However, DMPC lipid nanocapsules showed a substantial increase in gp140T-his binding, with a 9-fold increase in stable trimer binding over DOPC capsules.
In contrast, both isomers of the tetramethylrhodamine-based biosensor 5- and 6-ATR-ParM (His6/K33A/D63C/T174A/T175N/D224C/C287A) respond to GDP binding with a ~10-fold increase in fluorescence.
Similarly, mutation of D112 decreased the ability of VUF 10085 to inhibit CXCL11 binding, with a 13-fold increase in the relative IC50 values (WT = 169 nM, D112N =2.34 μM. In contrast, IC50 values for TAK-779 inhibition were very similar (WT = 15.6 μM and D112N = 17.2 μM, Figure 1F).
Briefly, aliquots of the DCC-treated vaginal tissue extracts (100 200 μl) were mixed with an equal volume of buffer containing [2,4,6,7,16,17-H N ]estradiol (specific activity = 110 Ci/mmol; Perkin-Elmer Life and Analytical Sciences, Boston, MA) without (total binding) or with a 200-fold molar excess of unlabeled diethylstilbestrol (non-specific binding).
The shorter fhlA53 construct on the other hand showed very different binding behavior with a 50-fold difference in the dissociation rates between the two apparent rates, explaining the propensity for fhlA53 to binding to a single site (proximal).
This value is higher than the value obtained for EphA2 phosphorylation and it is consistent with binding data where LCA has a 2-fold lower affinity towards EphB receptors when compared to EphA receptors.
SFA's effects on CCL5, CCL17, CCL19 and CD38 expression are likely to be independent of cyclophilin-binding since preincubation with a 100-fold molar excess of CsA did not abrogate SFA's inhibitory effects.
The gene with the strongest downregulation was the cold-inducible RNA binding motif protein 3 (Rbm3) with a 19-fold reduced expression immediately after hypoxia (Table 1).
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