Sentence examples for binding was constructed from from inspiring English sources
As a first step in the heuristic, a catalogue of Pfam-A domains capable of small molecule binding was constructed from small molecule bioactivities measured against single domain proteins from ChEMBL.
A homology model of Shigella-CS with the flavin mononucleotide (FMN) binding was constructed using the crystal structure of CS from other species.
The amine-binding GPCR tree was constructed from all 42 sequences in the "Amine" class (a subclass within the Class A GPCRs, which are themselves a subclass within the 766 human GPCR domain data set).
A base architecture was constructed from their binding in MP and E cells, with binding strengths modeled as exponentially increasing, decreasing, or remaining constant over time.
The dynamic couplings revealed that the hinge for both ring and subunit helix rotations was constructed from the proton-binding site and the adjacent glycine motif (IB-GGGG) in the midmembrane plane.
A heat map was constructed from the median normalized fluorescent data and in each case the synbody produced a unique binding profile suggesting that each synbody behaves as a unique binding entity (Figure 5A).
A large dataset of DNA-binding proteins is constructed from the Protein Data Bank and it serves as a gold-standard benchmark to evaluate the metaDBSite approach and the other six predictors.
For Kr, kni and ttk, matrices were constructed from binding sequences reported in bacteria-one-hybrid (B1H) experiments from [43].
The positive data sets are constructed from 226 known binding sites in our test data set by splitting the known binding sites into single- and double-strand binding sets according to the binding preference of each TF.
S can be constructed from experimentally verified binding sites, in silico predicted sites using a prediction algorithm such as fimo (http://meme.sdsc.edu), or a combination of both.
