Sentence examples for binding was computed using from inspiring English sources
The prediction of TF binding was computed using the TRANSFAC (Release 2010.2) [ 45] human binding motif position weight matrices (PWMs) (altogether 618 models) with the pseudocount 0.005.
The charges of the two cobalt ions present in the active site and of the side-chains involved in their binding were computed using ab-initio methods.
Further, potential binding energy was computed using the FLM program, and by means of this energy enthalpy, entropy and binding free energy were determined.
Enrichment of GO terms in 127 genes that had STAT1 and NF-κB-p65 binding sites and greater than 2-fold enrichment of Pol II binding in the co-treated sample was computed using DAVID (Jiao et al., 2012).
The binding free energy of each complex was computed using the Molecular Mechanics Poisson Boltzmann Surface Area (MM-PB/SA) method.
The probability of the binding site motif appearing by chance was computed using an expectation value given by the equation, where k is the number of possible nucleotides at position i.
The epitope number was computed using three algorithms: a homemade cleavage algorithm (Ginodi et al., 2008), a TAP-binding algorithms developed by Peters et al. (2003) and the BIMAS MHC binding (Parker et al., 1994) algorithms.
