Sentence examples for binding subunit as a from inspiring English sources

Previously, Rozenfeld and Thuriaux [ 22] performed PSI-BLAST using the S. cerevisiae B-block binding subunit as a query.

Subsequently, a PSI-BLAST search was performed using the human B-block binding subunit as a query of the fungi database.

This protein was hit also in the PSI-BLAST search using the human B-block binding subunit as a query (Fig. 2A).

Surprisingly, these four Arabidopsis proteins were identical to the proteins that were hit with low E-values in the PSI-BLAST search using the human B-block binding subunit as a query (Fig. 2A).

When a PSI-BLAST search was performed using the S. pombe B-block binding subunit as a query, alignments consisting of its C-terminal region and each of the Magnaporthe, Neurospora, and S. cerevisiae sequences were generated, but no homology to the C-terminal regions of the Arabidopsis proteins was suggested (Fig. 2B).

When a PSI-BLAST search was performed using the human B-block binding subunit as a query, it was shown that the C-terminal region also is conserved (Fig. 2A); for examples, Chironomus, Anopheres, Drosophila, and Arabidopsis (GIs, 25402830, 9665127, and 15218016) proteins are hit with E-values of e-29, 3e-7, 6e-54, 2e-20, 2e-39, and 2e-21 respectively (data not shown).

The ability of the catalytic subunit ISWI to reposition nucleosomes in a random walk fashion might be modified and regulated by other binding subunits as part of larger complexes.

However, in agreement with the result of Rozenfeld and Thuriaux [ 22], when the S. cerevisiae B-block binding subunit was used as a query, the C-terminal region of the Arabidopsis protein (GI 9665127) was hit after four iterations; aa positions 1032 1146 of the S. cerevisiae subunit aligned to positions 1673 1774 of the Arabidopsis protein (GI 9665127) with an E-value of 5e-21 (data not shown).

In a buffer solution containing ADP (without ATP), the protrusion of one β subunit in the E conformational state (i.e., in the nucleotide-free state) can be pushed using a cantilever tip, which may convert the conformation to that of the R state, triggering ADP binding to the subunit as well as ADP dissociation from one of the neighboring β subunits.

HMGB1 contains two folded DNA-binding subunits known as A and B boxes along with an acidic region.

The N-terminal end region of the B-block binding subunit of Saccharomyces cerevisiae is tentatively identified as a HMG box, which is the DNA binding motif.