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The binding sphere was defined based on the protein data bank (PDB) definition.
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The center of the fitted sphere was defined to be the geometric GH-JRC.
The center of the sphere was defined as the endpoint of the arm.
The outer coordination sphere is defined as that portion of the catalytic system that is beyond the second coordination sphere.
Jackson operator on the sphere is defined by (see [4]).
The radius of each sphere is defined by the calculated CCS of the atomic coordinates of each domain.
In the original occupancy model of Allik and Tuulmets influence spheres are defined around dots and have a fixed size.
Spheres were defined as free-floating spherical structures with a diameter > 50 μm.
In GOLD, the binding site was defined as a sphere with a radius of 10 Å centered at the position of the Nε atom in residue Gln 257.
In GOLD, the binding site was defined as a sphere with a radius of 10 Å centered at the position of atom C14 in the bound ligand.
In GOLD, the binding site was defined as a sphere with a radius of 10 Å centered at the position of atom C6 in the bound sialic acid ligand.
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