Residues that form each of the HBGA binding sites are indicated.
The DNA binding sites are indicated with black triangles (R35, T44, R45, T46, T47, R49 and 65H) (Xu et al., 2001), the ligand binding sites are shown with grey triangles (216G, 219S and 223W) (van Aalten et al., 2001), and the newly-proposed amino acids essential for DNA binding activity of FadR protein are highlighted with dark arrows (W60, F74 and W75).
A detailed summary of these results is shown in Table 1 and the confirmed binding sites are indicated by green lettering (Fig. 2B).
LAG-1 consensus binding sites are indicated by green arrowheads.
The mean number of putative GATA3 binding sites is indicated.
Primers used are listed in Supplementary file 1 and binding sites are indicated in gene diagrams with small black arrows.
The effects of each strategy upon the process of transcription and presence of underlying DNA elements such as transcription factor binding sites are indicated.
The amino acid and pyridoxal-5′-phosphate binding sites are indicated by a green and a blue background respectively, while the Schiff base Lys is indicated by a red background (Bonner et al., 2005 ; Yi et al., 2012 ).
Domain colours are described in Figure 6A, the membrane binding site is indicated (M).
Each motif that matches or contains a transcription factor binding site is indicated in the same output.
