Sentence examples for binding sites were conducted from inspiring English sources

Annotations for Fur, LexA, and σ54 binding sites were conducted for all strains; for σ70 and SigA, gram-negative and gram-positive strains, respectively; for SigK and SigG, sporulating strains; for σE, strains of Enterobacteriaceae.

The cloning of promoter constructs in luciferase reporter vector, the pGL3 basic vector and the ASPM, CDK5RAP2, MCPH1 and WDR62 promoter constructs containing mutations in estrogen receptor binding sites were conducted using QuickChange II XL site-directed mutagenesis kit (Stratagene. La Jolla, CA, USA) following the recommended protocols.

A correlation analysis of the TFs (CRP, FNR, and CcpA) and their binding sites was conducted.

Some portions of the microarray data are represented as heat maps in Additional File 8. Analysis of the sequences for transcription factor binding sites was conducted with the program MatInspector Professional (Genomatix Software, Munich, Germany) based on the MatInspector program using the selected matrix library (vertebrate section) and optimized thresholds.

The identification of cis-regulatory binding site was conducted by perl [ 46].

Therefore, an extensive survey of the correlations between the value of amino acid dihedral angles and ligand-binding sites was conducted.

Next, a systematic survey of the genomic regulatory landscape around candidate human-specific NANOG- and CTCF-binding sites was conducted to identify regulatory elements associated with putative human-specific TF-binding events.

Analysis of amino acid variations of the proposed antigenic sites [9] [11], receptor-binding sites [12], and potential glycosylation sites was conducted and variations are shown in Figure 1.

Global fits to a single-site binding model of data obtained from at least two titrations for each site were conducted using SEDPHAT (62).

Potential binding sites were elucidated by docking.

Ligand binding sites were predicted using 3DLigandSite.