Sentence examples for binding sites were combined from inspiring English sources

By means of our method, previously published Arabidopsis microarray data from cold acclimated plants at six different time points, promoter motif sequence data extracted from ~24,000 Arabidopsis promoters and known transcription factor binding sites were combined to construct a putative genetic regulatory interaction network.

In this study we describe a novel method for chimeric decoy formation in which blocks containing discrete transcription factor binding sites are combined into circular molecules.

A 2,4 kb promoter fragment of human CDKN1A encoding p21 CDK inhibitor and 13 copies of the optimal p53 binding site (PG13) [46] were combined into a p53-sensitive promoter.

Potential binding sites were elucidated by docking.

Search for conserved transcription factor binding sites was performed by combining the PromAn, TFSearch and MatInspector programs [39], [40].

Moreover, analysis of a Distal-less regulatory element (DMXR) that is repressed by abdominal Hox factors revealed that suboptimal binding sites can be combined to form high affinity transcription complexes.

Since ETS domains are highly conserved across ETS proteins, ETS binding sites are differentiated by the cooperation of other transcription factors [7, 11, 12] combined with base-specific interaction with variable bases flanking the central core sequence.

Two binding sites are separated into two disjoint enriched regions by PICS, whereas MACS [5] combined these two sites into a single region.

Here, these binding sites are not discussed one by one.

One method to reduce the presence of these information-poor binding sites is to apply stricter binding site conservation criteria.

These binding sites are highly charged.