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Plant miRNA binding sites occur typically in the coding region of target genes [ 51], whereas in animals, they are most often found within the 3'UTR [ 52].
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This suggests most transcription factor binding sites occur within 250 bp of the initiation site.
For each transcription factor binding site prediction, all species in which homologous transcription factor binding sites occur are color coded.
The majority of RAD-51 binding sites occur on chromosome arms.
This means that although the resolution of ChIP is limited by the size of the fragments, typically about 1 kb, the position of the binding site occurs in 80% of cases within 200 bp of the maximum enrichment.
Because the number of observed evolutionary differences in any particular binding site is typically small, I make the assumption that each DNA difference in a transcription factor binding site occurs independently, and presence of a single change has no effect on the probability of other changes.
The rebinding of the peptide from the solvent to the receptor binding site occurs slowly.
For IP/TPα, a unique isoprostane E2 binding site occurs.
A similar DRV binding site occurred in the crystal structures of PRM46L/DRV and PR20/DRV.
provide nucleation sites enabling nucleation to occur typically in the range of 0 to −20 °C in bulk samples.
Such motifs are good candidates for transcription factor binding sites, which typically occur in each of the promoters of co-regulated genes.
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