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The distribution of TSS-relative lofations of known binding sites is shown in Figure 1.
The distance between the TSSs and the putative TF binding sites is shown in Figure 13.
The list of most significantly enriched binding sites is shown in Table S6.
The nucleotide frequency of SNPs falling inside and outside transcription factor binding sites is shown in Table 3.
The distribution of these TFs around the c-Myc binding sites is shown in Figure 3. Here, the diagrams show that AP2 and ZIC3 do not or nearly not bind to the same site as c-Myc does, whereas E2F and ZF5 in some cases seem to bind to the same site as c-Myc.
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Peaks for residues at known RING binding sites are shown: I6 in helix 1, K63 in loop 4, L97 in loop 7; C85 is the active site Cys; I88 undergoes allosteric changes upon RING binding; L103 is present in helix 2.(C) Combined 1H and 15N chemical shift perturbations of 0.18 mM 15N-UbcH5a at 0.9 molar equivalents of RNF125stop129.
The 3D patterns corresponding to the quercetin binding sites are shown in green.
The 3D patterns whose residues are located near of the quercetin and imidazole binding sites, are shown in pink.
The TSPO binding sites were shown to be widespread and with high density in several subcortical nuclei, with more moderate binding in the cortex and dorsal striatum.
Conserved binding site clusters associated with each protein target are represented by gray bands on the inner circle; links describing the structural similarity between two binding sites are shown in the center.
The DNA binding sites are indicated with black triangles (R35, T44, R45, T46, T47, R49 and 65H) (Xu et al., 2001), the ligand binding sites are shown with grey triangles (216G, 219S and 223W) (van Aalten et al., 2001), and the newly-proposed amino acids essential for DNA binding activity of FadR protein are highlighted with dark arrows (W60, F74 and W75).
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binding sites is suggested
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binding sites is known
binding partners is shown
binding sites is required
binding sites is observed
binding events is shown
binding units is shown
binding sites is considered
binding sites is phosphorylated
binding sites is obtained
binding sites is based
binding sites is limited
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