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CTCF binding sites have been found next to thyroid or steroid receptor binding sites in several cases [8], [39], [40].
Mg++ is stabilized at the ATP binding sites in several recombinases [ 61, 67].
Vice versa, spreading depolarization in rat neocortex modulates GABAA binding sites in several subcortical regions (Haghir et al., 2009).
Earlier, several genome-wide studies identified ~14,000 to ~27,000 CTCF binding sites in several human cell lines.
To investigate the conformational changes after ATP hydrolysis, the bound ATP was hydrolyzed in silico to ADP and Pi at either or both of the binding sites in several MalK simulations.
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The 8 bp indel located at SWS2A-217 compleliminatesinathe the CRX binding site in several species (Additional file 8).
We searched for putative Sall2-binding sites in several apoptotic-related genes including members of the BH3-only, the proapoptotic BAX-like and the antiapoptotic Bcl-2 protein subfamilies (Supplementary Figure 2).
Given the existence of the JmjC domain in NO66, and the presence of conserved amino acids that have been implicated as co-factor-binding sites in several other JmjC-containing proteins (Klose et al, 2006 and Figure 4A), we tested NO66 for histone demethylase activity.
However, a recent study in the United Kingdom found a polymorphism in the probe-binding site in several HEV-infected patients who initially had negative test results using this assay (40 ).
Below (see Results), we examine binding sites in yeast for several transcription factors, and conclude that dinucleotide correlations are significant in several cases, and occur with gaps of all lengths in a binding region, not just with nearest-neighbours.
We searched for miR-1279 binding sites in the CDSs of several genes from this family.
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