Sentence examples for binding sites identified with from inspiring English sources

TR binding sites identified with ChIP-on-chip were analyzed independently with ChIP-PCR for 13 randomly selected genes.

This database contains motif matrices from best-scoring TF binding sites identified with a ChIP-chip or ChIP-seq fragment.

For instance, nearly all the binding sites identified with PeakFinderC were also identified with most of the other algorithms.

This database also contains motif matrices from best-scoring TF binding sites identified with a ChIP-chip or ChIP-seq fragment.

Of the 4,794 binding sites identified with a tag threshold of 428 occurred within 5 kb upstream of genes, 106 in protein coding exons, and 232 within 5 kb downstream of genes (see Additional file 2: Table S2).

The investigation of the average overlap between the algorithms showed that most of the binding sites identified with the methods producing the shortest lists were also detected with the other approaches.

Interestingly, several of the potential transcription factor binding sites identified within the observed CNEs correspond with these known functions of Hivep paralogs.

Comparison of putative PR binding sites revealed a much greater sequence conservation amongst vertebrates for the progesterone treated, estrogen pretreated binding sites than the binding sites identified after treatment with progesterone alone, as well as a greater number of reads per peak (Fig.  2b-d).

MeDiChISeq compares for this purpose the putative binding sites identified by kernel fitting with the "kernel-fitting residuals" (i.e., those not complying with the model, and corresponding to the background).

In line with this, several WRKY transcription factors with binding sites identified in the OsEUL promoters are regulated by diverse biotic stresses.

A comparison with CTCF binding sites identified by the ENCODE project also showed minimal overlap with HFRs (Additional file 1: Figure S2).