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We take a further step to combine binding sites detected from both strands.
Binding sites detected from different strands are reserved unless two sites are too close (less than 20 bp from each other).
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This motif was deduced from 150 binding sites detected for the incomplete DCC complex formed in mutant msl-3 flies.
The query pharmacophore model can be derived from the potential binding sites detected previously or user customized ones.
Alternative products of a primer pair are computed from the potential binding sites detected by FastaGrep.
Alpha spheres corresponding to binding sites detected by fpocket are shown in red for a default, and b modified parameters.
Interestingly, around half of the 15311 binding sites detected in ESCs, namely 7012 (45.8%), were also detected in EBs.
Vasarhelyi, B. et al. Three mechanisms in the pathogenesis of pre-eclampsia suggested by over-represented transcription factor-binding sites detected with comparative promoter analysis.
This is essentially consistent with a previous study, where more than 200,000 putative TBP-binding sites were detected from the Arabidopsis genome [ 27].
Again, none of these putative HMGA2 binding sites was detected in sequences resulting from ChIP.
We developed a method called SeqSite for detecting binding regions and pinpointing closely spaced adjacent binding sites in detected binding regions.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com