Sentence examples for binding sites defined by from inspiring English sources

(g) All CpGs in both proliferating and arrested ESCs that overlap with OCT4 binding sites (defined by ChIP-seq, ENCODE H1 human ESCs) are displayed.

We used two approaches for motif search in the Pax8 binding sites defined by MACS.

The proposed approach reveals critical differences in the sets of binding sites defined by the commonly used TFBS models.

To assess the functionality of σ binding sites defined by the ChIP-chip and PSSM analyses, promoter- lacZ fusion assays were performed using several of these sequences.

The question of practical interest is to estimate a degree of similarity between the sets of binding sites defined by different models for the same TF.

Conserved SOX9 consensus binding sites, defined by the Transfac database, were identified by comparing the human genome with that of mouse or dog using rVista [ 26].

In addition, the 3D structures allowed the precise delineation of a binding site, defined by highly conserved residues in the vicinity of co-crystallized ligands.

Before virtual screening, the cocrystallized antitumor agent, LY2940680, had been redocked by LigandFit protocol into the binding site defined by the volume of LY2940680) to validate the accuracy of LigandFit protocol.

It is an interesting possibility that fibrinogen/fibrin competes with proteins such as fibronectin and matrix metalloproteinase-1 for the same binding site on collagen fibres, i.e. the binding site defined by the peptide II-44; such a competition will attribute an ECM-modulating role of fibrin deposited in tissues during inflammation, carcinoma and healing wounds.

It generates a built-in bias for finding the correct binding site and ensures that the head needs to travel and search only along one dimension to find the desired binding site defined by the torsion about the leading head and neck linker rather than a lower probability three-dimensional Brownian search.

Wnt isoforms in the third class (Wnt7a, 7b, and 10a) that are not antagonized by YW211.31.57 or YW210.09 antibody might bind to a site on LRP6 not blocked by either antibody or, alternatively, they may have the ability to bind to either of the Wnt-binding sites defined by the antibodies.