Sentence examples for binding sites considered by from inspiring English sources
Table 1 is only used to discuss ReXSpecies results; there is no initial expert-guided restriction on the transcription factor binding sites considered by ReXSpecies.
Stoichiometry (N) is the number of binding sites considered for the fit.
However, the TopoIIα gene promoter lacks an E2F-consensus binding site considering the first 700 nucleotides from the transcription start site (Hochhauser et al, 1992), suggesting the involvement of an intermediary actor in the TopoIIα gene regulation by E2F members.
In contrast, our method predicts the binding sites by considering the binding conformations of the query ligand.
TF binding information was downloaded from MsigDB, which strengthened the prediction of true binding sites by considering the conservation across genomes [ 24].
When only putative recombinase binding sites are considered, FL-CS-2798 and FL-CS8-2798 difrom from FL-2798 by five and eight nucleotides, respectively.
The top four predicted sites proposed by Q-SiteFinder as the putative binding site are considered; a minimum of P-value at this setting is observed (Supplementary Material).
A CTCF binding site was considered a constitutive binding site when the same motif site was present in more than 90% of the 55 cell lines.
Specifically, similarity of binding sites is assessed by considering the sites' sequence and structure conservation as well as physicochemical properties of protein assemblies.
