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Exact(19)
This result is consistent with model prediction, where all the three AP-1-related binding sites are predicted to contribute to the under- expression in androgen-independent samples (TF < 0, Table 1).
A stronger Shn binding sites are predicted further upstream by Stubb and Phylogibbs.
Many visceral mesoderm factor binding sites are predicted in this region.
Several Dl binding sites are predicted between −2.0 to −4.0 kb.
Similarly, several Bin binding sites are predicted by both Stubb and PhyloGibbs between −1.0 to −3.0 kb (Figure 6).
Based on this low degree of sequence specificity, Ubx monomer binding sites are predicted to occur several times per kilobase in eukaryotic genomes.
Similar(41)
In our modelling, first the strongest binding sites were predicted and next we gradually increased the adatoms coverage until the maximum capacity was reached.
Potential ligand binding sites were predicted by PocketPicker [21], [22].
Four more E2F binding sites were predicted in further upstream regions.
Next, transcription factor binding sites were predicted on human PIK3CA 5'TRR in silico by GenomatiX (http://www.genomatix.de/index.html).html
Of the transcription factors whose binding sites were predicted in this study, 37 had forty or more binding sites throughout the S. cerevisiae genome.
More suggestions(17)
binding sites are described
binding sites are calculated
binding sites are estimated
binding sites are conserved
binding sites are provided
binding sites are paired
binding proteins are predicted
binding sites are extracted
binding sites are assessed
binding sites are characterized
binding sites are identified
binding affinities are predicted
binding sites are given
binding sites are illustrated
binding sites are shared
binding sites are maintained
binding sites are assumed
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