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All of the potential binding sites are listed in Table S1.
The list of factors and their putative binding sites are listed in Supplementary Datasheet S1.
However, genes whose intragenic sequences contain Atf1 and/or Pcr1 binding sites are listed in Table S9.
Primer sequences used for amplification of promoter fragments harbouring GLI binding sites are listed in Supporting Information Table S3.
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Putative miR binding sites were listed only when their presence was also supported by an independent algorithm, miRanda [18].
Residues that are predicted to be within 5 Å of GO at each binding site are listed in Table 2.
The motifs with a known TF binding site are listed in the Additional file 1: Figure S4.
The position of the HSE (p-value <1×10−4) closest to the peak of each binding site is listed in Table 1 and in Table S2.
The primers used for construction of luciferase reporters and mutations of miR-124 binding miR-124 bindingd in Table 1.
sites are listed.
Positively selected sites were listed.
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