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We show the genome-wide high resolution binding profile of the POF protein where these different POF binding sites are detected.
This is a phenomenon arising from the integration of cavity detection into the workflow and represents a case where two overlapping binding sites are detected (depicted in red and yellow).
Potential binding sites are detected with TRANSFAC weight matrices by the method of [ 29].
Three-fold more binding sites are detected in the random sequences than in the real promoter sequences, suggesting a non-random nucleotide distribution in real promoter sequences.
The fact that Prp43 is not specifically recruited to the preribosome can explain why several binding sites are detected by cross-link experiments [ 23].
In our method, we attempted to alleviate this problem by repeating the process of peak-calling, fitting regression and peak-calling again, iteratively, such that if weak binding sites are detected at some iteration, their information will be included in the training of regression model, and a new iteration of peak-calling will be applied.
Similar(53)
With the iodinated TxR agonist [125I]BOP, TxA2 binding sites were detected throughout the kidney.
Overlapping σ-factor binding sites were detected frequently in Escherichia coli: e.g. 38 genes were assigned to 4 different sigma factors and 2 genes were even assigned to 6 sigma factors (Cho et al. 2014).
Again, none of these putative HMGA2 binding sites was detected in sequences resulting from ChIP.
Potential binding sites were detected with the grid-based cavity prediction algorithm.
To test the MAR potential of this newly identified fragment, the core sequence of this fragment with predicted SATB1 binding sites was detected for the SATB1 binding capacity by EMSA.
More suggestions(19)
binding sites are identified
binding sites are conserved
binding sites are paired
binding cells are detected
binding sites are assessed
binding sites are extracted
binding events are detected
binding sites are considered
binding sites are characterized
binding sites are found
binding sites are represented
binding sites are arranged
binding sites are indicated
binding sites are given
binding sites are shared
binding sites are maintained
binding sites are assumed
binding sites are located
binding sites are underrepresented
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