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We attribute the lack of detectable binding at most Class II sites to the speed with which Pif1 family helicases unwind G4 structures [ 19], the stringent criteria used to identify binding sites, and technical difficulties detecting DNA helicases by ChIP [ 18].
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We believe that the OmpR-binding sites revealed here are bona fide binding sites given the consistency of the known binding sites and their motifs.
(A) Sequences of the CTGF 3′-UTR containing the miR-26a and miR-30c binding sites and the Snail1 3′-UTR conthening the miR-30c binding site.
Mustonen, V. & Lässig, M. Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.
The binding mechanism, binding constants, binding sites and binding distance were obtained.
In addition to discovering TF binding sites and a motif model for those binding sites, PRIORITY also predicts the structural class of the TF recognizing the binding sites.
The binding constants, binding sites and the corresponding thermodynamic parameters (ΔH, ΔG and ΔS) were calculated.
SK binding sites are distributed in a pattern distinct from SP binding sites and are localized to the external circular muscle, external longitudinal muscle, and the muscularis mucosa.
Both have Cdc42 binding sites and N-WASP binding sites.
Phylogibbs predicts strong Mad binding sites and few Brk binding sites in the proximal constructs.
NS3h contains two important binding sites: the NTPase binding site and the RNA binding site.
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