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ND analysed the TRANSFAC binding sites and prepared the data sets.
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JB conducted alternative splicing experiments and bioinformatic analysis; MP conducted in situ hybridization experiments; RD identified transcription factor binding sites; AF prepared text and figures, and assisted with data analysis; AR supervised studies and assisted with data analysis.
We believe that the OmpR-binding sites revealed here are bona fide binding sites given the consistency of the known binding sites and their motifs.
(A) Sequences of the CTGF 3′-UTR containing the miR-26a and miR-30c binding sites and the Snail1 3′-UTR conthening the miR-30c binding site.
The binding mechanism, binding constants, binding sites and binding distance were obtained.
In addition to discovering TF binding sites and a motif model for those binding sites, PRIORITY also predicts the structural class of the TF recognizing the binding sites.
The binding constants, binding sites and the corresponding thermodynamic parameters (ΔH, ΔG and ΔS) were calculated.
Both have Cdc42 binding sites and N-WASP binding sites.
The water soluble 43,000-dalton fragments of band 3 (the high-affinity ankyrin binding sites) were prepared from one of the patients and competed normally for 125I-ankyrin binding in solution.
Based on these 12 predicted binding sites, we prepared 11 probes for EMSAs (see Fig. S10 and Table S4).
ILs and β-CD was applied to provide multiple binding sites to prepare Lys SMIP and Fe3O4@DA was designed to make the product separate easily and prevent the aggregation of GO which could improve absorption capacity for its large specific surface area.
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