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It bears a very peculiar network of interactions at the binding site, which revolves around the coordination complex formed by a zinc ion, three hystidine residues, and the inhibitor.
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Sum1 binds a DNA binding site which resembles, and partly overlaps, the binding site of Ndt80 [ 23], [ 18].
Among many other binding sites lost in the –673 construct were an E-box, a STAT binding site which forms a sequence model (Genomatix modelInspector) together with an ets binding site, and a Myc associated zinc finger binding site (MAZF).
There exist two Cys and one Met residues on protein binding site, which are potential stabilizing residues of peptide binding.
Any binding site which had a p < 0.01 was annotated as a potential miRNA binding site.
When binding to DNA, LysR protein forms a homodimer and targets two specific binding sites, a regulatory binding site, which has the conserved T-N11-A/TTA-N7/8-GAA T-N11-A/TTA-N7/8-GAA T-N11-A/TTA-N7/8-GAA T-N11-A/TTA-N7/8-GAA T-N11-A/TTA-N7/8-GAAig. 2b).
The PACAP specific binding sites which were not shared VIP were termed type I, while the binding sites shared with both PACAP and VIP were termed Type II.
To generate a list of unambiguous CTCF negative RAD21 binding sites we removed these sites, leaving 667 reassessed CTCF independent RAD21 binding sites, which we define as motif and CTCF-independent RAD21 binding sites (MCIB).
This transcription factor binding site search identified multiple putative krüppel-like transcription factor binding sites which are indicated in Figure 5A.
The sequence of this binding site does not resemble any known ATP binding sites, which have much higher binding affinities.
In the Ptolemaic system each planet revolves uniformly along a circular path (epicycle), the centre of which revolves around the Earth along a larger circular path (deferent).
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