Sentence examples for binding site were searched from inspiring English sources

Regions 250 base pairs upstream and downstream from the predicted binding site were searched using MAST [50] for the high confidence hits of the canonical motif for the TF.

The putative APUM5 binding site was searched in the 3′ UTR region of abiotic stress-responsive genes to investigate the possible role of APUM5 as a post-transcriptional repressor.

RAX binding sites were searched on the 5 kb promoter sequences of these randomly selected genes.

Transcription factor binding sites were searched using TFSCAN from EMBOSS and promoter regions were searched using the neural network promoter prediction software.

Consensus RAX binding sites were searched for on both strands of promoter sequences using Possumsearch with a threshold of 80% matrix similarity [ 88].

GcrA putative binding sites were searched for in promoter regions of genes encoding factors involved in cell cycle regulation using a strategy similar to the one followed to predict CtrA regulons (see Methods section).

Potential transcription factor binding site motifs were searched using TFSEARCH (http://mbs.cbrc.jp/research/db/TFSEARCH.html) and TESS (http://www.cbil.upenn.edu/tess) programs 29.

Only three instances of a possible binding site were found in these searches, all of which are located in the upstream regions of the most strongly regulated genes, by name cg1514, cg3138, and cysI.

Potential inhibitors for the S-adenosylmethionine binding site were explored using 2D similarity searching, pharmacophore filtering and docking.

We saw that Autodock reproduced docking conformations close to crystal structures if the binding site were chosen to be the searching region.

For each binding site, a position weight matrix model of the binding site was used to search each orthologous intergenic sequence.