Sentence examples for binding site were identified from inspiring English sources
The published crystal structure of the yeast proteosome in complex with salinosporamide A [25] was examined and the residues proximal to the inhibitor binding site were identified.
Sites matching the putative C57Bl/6 PRDM9 binding site were identified with MAST, using standard parameters.
As is seen with other amyloid-β ligands, one high-affinity and one low-affinity binding site were identified [ 6, 13].
Within this construct a RXRα, two Sp1, a CAC-binding protein and a PPARα binding site were identified using the Transfac database via the online-tools TESS and PATCH.
A Zn2+ binding site was identified by X-ray fluorescence emission analysis of the CCR2-T4L BMS-681 CCR2-RA-[R] CCR2-T4L BMS-681 CCR2-RA-[R]
Strikingly, a novel potentially SMYD2-specific polyethylene glycol binding site is identified in the CTD domain, implicating possible functions in extended substrate binding or protein protein interactions.
A homology model of the steroidogenic acute regulatory protein (STAR -related lipid tranSTAR -relateddomain of STARD1 was builipidnd transfereSTARTl bindomainite was identified.
For example, WRKY71 for whom a binding site was identified in the OsEULS2 promoter was upregulated upon infection with Magnaporthe grisea (Berri et al. 2009).
Here, the development of a new pharmacophoric binding site descriptor in the spirit of Cavbase [3] is presented: Instead of focussing on ligand features, crucial amino-acid residues within the binding site are identified and represented as a pharmacophore model.
