Sentence examples for binding site was considered from inspiring English sources

A binding site was considered conserved across the alignment based upon the score threshold computed with the Transfac Matrix Database (v7.0).

A binding site was considered to be conserved across the alignment if its score met the threshold score for its binding matrix.

A TF binding site was considered to be enriched in a gene set on the basis of the P value (P value < 0.001 and Yes/No > 1.2).

A CTCF binding site was considered a constitutive binding site when the same motif site was present in more than 90% of the 55 cell lines.

Data were quantitated using ImageQuant (Amersham Biosciences), and a binding site was considered to be regulated only if it showed reciprocal regulation in the overexpression and the shRNA cell lines.

The molecules with a maximum of at least 2 H-bonds with the hinge region at the ATP binding site were considered along with any one of the rings.

Three properties of the binding site were considered: the total number of atoms at 4 Å from its surface, its hydrophobicity, i.e., the fraction of carbon atoms among this total number, and its exposure to the solvent.

Only genes containing both a potential core binding site and a potential half binding site were considered as positive for the presence of a "complete QRE".

A binding site is considered to be conserved if its score meets the threshold score for its binding matrix in all 3 species.

Although the TLR4 promoter region has no direct STAT3 binding site, its PU.1 binding site is considered to be one of its main regulatory elements and STAT3 has been shown to be capable of activating PU.1 [51].

The side chains of residues surrounding the binding site were considered flexible.