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The primary binding site is composed of pyrimidine-specific binding clefts that are located in the N-terminal domains and anchor Rho to transcripts at C-rich Rut (Rho utilization) sites.
Then the binding site is composed of residues within 10 Å from the ligand (Fig. 4b).
The binding site is composed of residues (green) within 8 Å from the ligand (red).
And the binding site is composed of residues (green) within 10 Å from the ligand (red), which is different from 8 Å for bound chain prediction.
For bound chain (such as PDB ID: 5p2p, CHAIN ID: A), the binding site is composed of residues within 8 Å from the ligand (Fig. 4a).
The outer binding site is composed of HBP1 and HBP1', formed primarily by residues Lys15, Leu17, Thr106, and Val121 of both subunits.
Similar(51)
The genes of a receptor's binding site are composed individually by rearranging short pieces of DNA.
In fungal Mn peroxidase, the Mn-binding site is composed of Glu35, Glu39, and Asp179.
Combining both structural kinetic relationship analyses and docking studies, we fourmulated that the ligand-binding site is composed of three H-bonds and three hydrophobic features.
The receptor-binding site is composed of three structural elements, including the 190-helix (HA1 188–190), the 130-loop (HA1 134–138) and the 220-loop (HA1 221–228), as well as several conserved residues at the W153, H183 and L194 positions.
The canonical ligand-binding site is composed of β1, L1, β2, L3, and L6 (exemplified in the crystal structure of PLC-δ1, PDB file 1MAI) and, roughly speaking, is confined to a triangular area with L1, L3, and L6 as the three vertices.
More suggestions(17)
binding site is found
binding site is increased
binding site is shifted
binding site is outlined
binding site is related
binding site is blocked
binding site is embraced
binding site is located
binding site is provided
binding site is based
binding site is buried
binding site is regarded
binding site is shown
binding site is blanked
binding site is involved
binding site is conserved
binding motif is composed
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