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In contrast, the amorphous-cellulose binding CBM used in this work, CBM44, is a Type B CBM with a binding site comprised of a narrow groove lined with hydrophobic aromatic residues [ 72].
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Using RosettaMatch to identify appropriate backbone geometries and a negative design approach to disfavor undesirable coordination environments, the group engineered an octahedral metal-binding site comprised of Bpy-Ala, Asp, Glu, and two water molecules.
Within each of its five equivalent β-sheets, the horseshoe crab tachylectin-2 harbors an individual N-acetyl sugar-binding site comprised of 8 functional residues capable of direct interaction with target ligands.
The cofactor binding site comprises two pockets; one of which is close to the surface of the SSADH molecule and accommodates the adenosine (adenine and the first ribose) and the 2'phosphate.
The CobR FAD binding site comprises residues from both subunits and highlights the importance of the CobR homodimer in binding FAD.
The molecular interaction fields (MIF -based analysis of cavities coMIF -based MD findings indicanalysisputative binding site cofprising the same residues determining epitope reorganization.
RETECD envelopes the dimeric ligand complex through a composite binding site comprising four discrete contact sites.
The DNA binding site comprises helices that form a flat spine.
In this way we could identify 1271 ERα-only and 4541 ERβ-only binding sites, comprised in these regions, none of which showed nearby binding of the other receptor.
The modelled DXR has a three-domain architecture and its active site comprised of a cofactor (NADPH) binding pocket and the substrate-binding pocket.
Importantly, a single drug-binding site comprises several of these microenvironments, often between 10 and 20.
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