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In addition, the 3' end of ccdB functions as a primer binding site common to all vectors.
The only binding site common to all the sequences expressed in the sensory vesicle, but not detected in the other regulatory elements is Pax6.
Residue D455 is located at the beginning of the mid region in H. pylori strain 60190 and it was proposed that this area represents a receptor binding site common to all m1 and m2 strains [ 24].
The PKA RII binding site common to all AKAP18 isoforms was fused to the N-terminus of AKAR2 to create a FRET-based kinase activity sensor that anchors type II PKA holoenzyme.
The structure of the C-terminal catalytic domain of tRNA splicing endoribonuclease (RNase) EndA is identical to the minimal core of the PD-(D/E XK fold [ 23], yet this protein lacks the Mg2+ binding site common to its cousins that cleave phosphodiester bonds in DNA.
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Algorithms in the Genomatix program were used to identify transcription factor binding sites common to the regulatory sequences in the 5′ regions of co-regulated set of crystallin and other genes as compared to a set of control genes.
The study aims were: (i) to investigate the association of inferred allele combinations across the COL5A1 3′-UTR, BGN and DCN genes with susceptibility to ACL rupture; and (ii) to use an in silico approach to identify miRNA binding sites common to these risk associated allele combinations.
For this, we initially focussed on highly consistent MYCN binding sites common to all NB cell lines used in the study.
However, the HLH-1 binding sites common to these two very different methods suggest that many (55 84%) of the gene calls reflected bona fide regions of HLH-1 localization in embryonic chromatin.
Secondly, a binding site analysis was conducted to find binding sites common to and missing from brain and gonad specific promoters respectively.
In Figure 2B, we also highlight several conserved transcription factor binding sites common to each sequence, including sites for CRX, THR, and AP-1.
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