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The position and orientation for each potential σ binding site are indicated in Table 3 and summarized for all the binding sites in Figure 2.
(C ) Rotated 90° around x compared to the view in B. (D ) Looking down onto the fHbp binding site on CFH the two, conservative, sequence differences between the CFH67 and CFHR312 found in the binding site are indicated in red on the grey surface.
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Domain colours are described in Figure 6A, the membrane binding site is indicated (M).
Each motif that matches or contains a transcription factor binding site is indicated in the same output.
Primers used for vector construction and verification are listed in Table 2.>> -wrap-foot> aResitestion sites are indicated in italics and the ribosomal binding site is indicated in bold.
Henneman et al. (2008) selectively reported the effect of a mutation that weakens a natural donor splice site in APOA5, however only a change in the information content of an SC35 binding site was indicated.
In case more genes are present encoding the same function then the number of genes with a clear binding site is indicated between brackets and if in addition the other gene(s) are preceded by a less clear site then the cell is marked light grey.
Residues that form each of the HBGA binding sites are indicated.
The DNA binding sites are indicated with black triangles (R35, T44, R45, T46, T47, R49 and 65H) (Xu et al., 2001), the ligand binding sites are shown with grey triangles (216G, 219S and 223W) (van Aalten et al., 2001), and the newly-proposed amino acids essential for DNA binding activity of FadR protein are highlighted with dark arrows (W60, F74 and W75).
A detailed summary of these results is shown in Table 1 and the confirmed binding sites are indicated by green lettering (Fig. 2B).
LAG-1 consensus binding sites are indicated by green arrowheads.
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