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Resonances located within the SH3 binding site are annotated in red.
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On each gene transcript associated to the selected gene, miRNA binding sites are annotated.
The positions of these binding sites are annotated, using information from the Protein Data Bank (PDB) in combination with author information extracted from the paper.
Identified p53-binding sites were annotated and the locations of p53-binding sites were assigned to RefSeq genes [22].
The H4 Ser 47 site is annotated as a DNA-binding site on sequence records, but not as phosphorylation site (58).
Strikingly, only 7 of these sites are annotated and known to affect microtubule binding.
Other CpG sites are annotated with gray lines.
The Patch™ program [ 11] was used to inspect both promoter sequences for the occurence of plant transcription factor (TF) binding sites that are annotated to the TRANSFAC® database [ 11].
WRKY6 binding sites had been annotated before and were now updated (7, 19, 21).
Combinatorial regulation by multiple TFs is less well-known and fewer combinatorial annotated binding sites are reported in databases or even in the literature (see [79]).
Otherwise, this binding site is regarded as an incorrectly predicted binding site.
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