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The C-terminal half of Scp1 mediates actin bundling and harbors two distinct actin-binding sequences, one in the proline-rich region and one in the CLR (Goodman et al. 2003; Winder et al. 2003; Gheorghe et al. 2008).
We obtained two unique SEB binding sequences, one ricin binding sequence and two BoNT/A complex toxoid binding sequences.
For Kr, kni and ttk, matrices were constructed from binding sequences reported in bacteria-one-hybrid (B1H) experiments from [43].
That means a prediction having multiple binding sites in one sequence and none in the others is much less significant than a prediction having a balanced number of binding sites in each sequence.
Using the ChampionChIP database, we located a potential consensus Chop-binding sequence in the Tbx21 promoter (chromosome 11: 97098007–97115331) (Fig. 4d).
A. IDD8-binding sequence in SUS4 promoter.
Recent comparative phylogenetic studies have revealed that conserved miRNA-binding sequences are in more than one-third of all genes, suggesting that miRNA regulation may be relevant to a large portion of cellular processes [ 39- 44].
To choose the term weights for a particular protein-protein interaction, the same procedure was carried out, but only with respect to sequence specificity in one binding partner.
The architecture of the binding sites in the Six2 promoter, but not the binding sequence itself, is very similar to the one in the Gdnf promoter.
The DNA binding domain of TALEs comprises tandem repeats of 34 amino acid sequences, whereby each repeat recognizes one nucleotide in the target DNA binding sequence.
protein-binding DNA sequences in the cis-regulatory region.
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