Sentence examples for binding sequences found in from inspiring English sources

First, we made a list of high-quality PWMs for factors of known importance in mesoderm development, using sequences from PWMs, using the Flyreg database of DNAse I footprints [32], binding sequences found in recent bacteria-one-hybrid system (B1H) studies [33], [43], and weight matrices from the literature.

The two most optimal binding sequences found in Boger et al. were ATATT and AATAT.

Increased TRAIL gene transcription has been reported in responce to several cytokines and in some cases have been ascribed to transcription factors (Fig. 3) with consensus binding sequences found in the TRAIL gene promoter (Fig. 4).

The IQ-motif is an amphipathic, often positively charged, α-helical, calmodulin binding sequence found in a number of eukaryote signalling, transport and cytoskeletal proteins.

As expected, there was a significant loss of STAT3 binding to the STAT3 binding sequence found in the survivin promoter in the OSA8 and SJSA lines following incubation with LLL3 when compared to cells treated with media or DMSO (Fig. 4B).

However, we did not consider any possible type-I AdpA binding in the analyses described above; only single AdpA-binding consensus-like sequences found in each AdpA-binding region were used for the analyses (see Discussion).

Additionally, it was confirmed by ELISA that the purified antibodies showed little or no binding to the sequences found in Scramble 1 or 2, or OMPC.

Although all identified peptide sequences showed no significant binding motif, the analysis of the resulting Ni3B-binding sequences found them to be enriched in charged amino acids.

Closer examination of the putative consensus binding sequence revealed the exclusion of thymine (uracil in RNA) at base position 4 and a strong inclusion of adenine at base position 5. Interestingly, the predicted SAFB1-binding motif is not dissimilar to purine-rich sequences found in RNA-binding motifs for other SR proteins (reviewed in [ 26]).

Third, the linker between ZF1 and ZF2 was significantly longer than and distinct from the canonical TGE(K/R P sequences found in the DNA-binding ZFs, which are critical parameters for their DNA-binding affinities (Laity et al., 2000).

Binding sites in the mouse genome are enriched in sequences found in the peaks of especially navigable landscapes and the genetic diversity of binding sites in yeast increases with the number of sequences in a peak.