If only a few residues are perturbed, 'Auto-FACE' would not be required as the perturbed residues must be coming from the binding site residues.
Actually, I expected almost the opposite: two residues i and j that bind the same molecule must have small fluctuations of their interatomic distance <(DeltaR_ij)^2>, so that I expected that residues in a binding site must be characterized by <(DeltaR_ij)^2> smaller than generic residues.
The transcription factor NF-κB is an example of distinct redox-sensitive activation and DNA binding [57]; it is activated by various physiological stimuli known to produce ROS; on the contrary, to permit DNA binding, similar to Fos, Jun, and Nrf2, cysteine residue within DNA binding domain must be reduced.
Lastly, 3D models of Umsid2 module 1, indicate that the binding region must be filled with many hydrophobic residues (Table 2) leading to a very shallow pocket, likely to be selective for GLY.
This pocket is covered by the sidechains of residues Asp94, Arg145, Arg148 and Asp149 (Fig. 3b), the resorcinol molecule diffusing in or out of the binding pocket must be dependent on certain conformational changes of these residues' sidechains.
The complementarity-determining regions (CDRs) contain the residues in a defined loop structure that confer antigen binding, which must be retained in the humanized antibody.
"Rules must be binding, violations must be punished, words must mean something".
It must be binding and must be able to be verified and enforced.
The more residues that must be specified to stipulate binding, the lower the probability is that this will occur spontaneously within a non-phosphorylated sequence.
