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Binding reactions were conducted by mixing nucleic acids and proteins in the binding buffer (a commercial resource from Beyotime), in a final volume of 20 µl.
To create a pseudo-first-order condition that simplifies the kinetic analysis, all binding reactions were conducted under conditions of Dtot ≪ Ptot ≪ Ctot.
Binding reactions were conducted in solution at 37°C for 14 16 h in the early and for 1 3 h in the later rounds.
Whenever possible, the binding reactions were conducted at multiple temperatures, so that the change in heat capacity (ΔΔ C p ) of the binding reaction could be determined.
The binding reactions were conducted with 5 μg of nuclear extract and of 2 × 105 cpm of [γ-P]-labeled oligonucleotide probe at 22°C for 20 minutes in a final volume of 10 μl, and complexes were resolved on non-denaturing 6% polyacrylamide gels.
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The binding reaction was conducted at room temperature for 20 min with 5 μg of nuclear extract, 40,000 dpm (0.08 0.4 ng) of radiolabeled oligonucleotide probe, in 1x Ficoll buffer (10 mM Tris (pH 7.5), 1 mM DTT, 1 mM EDTA, and 4% Ficoll), 250 ng of poly(deoxyinosinic-deoxycytidylic acid) in 75 mM KCl, and double-distilled H2O to make the volume to 15 μl.
Reactions were conducted for 1, 24, or 72 at 37 °C.
Enzymatic reactions were conducted for 15 min at 37 °C.
Reactions were conducted at 50 °C for 10 min.
Triplicate PCR reactions were conducted.
Assembly reactions were conducted in 3 steps.
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