Sentence examples for binding proteins using the from inspiring English sources

In addition, we have analysed the energetic and electrostatic properties of ubiquitin-like domains in complex with various functional binding proteins using the protein design algorithm FoldX.

Since HMG boxes contain three helices (see above), I predicted the secondary structures of N- and C-terminal regions of B-block binding proteins using the PSIPRED method [ 29].

Antiserum was produced against a fragment of Arabidopsis CAO that had been fused to the maltose binding protein using the pMAL fusion system (New England Biolabs, Beverly, MA).

We have evaluated the conservation of residues in each RNA binding protein using the server, Consurf [ 24] available at http://consurf.tau.ac.il/.

Moreover, these TFs may interact with different binding proteins using different regions of the homeodomain depending on their dimerizing partners, which will then also affect the spacing between the two proteins [ 45].

The AP-2 and Ets sites have been targeted by either preventing the binding of the cognate binding protein (using sodium aurothiomalate for AP-2 [ 16] and DNA-binding polyamides for Ets factors [ 17]) or by creating fusion proteins between the appropriate DNA-binding domain and a transcriptional repressor [ 4], in all cases impairing promoter activity in functional assays.

Various assays for dipeptide transport by the dipeptide and tripeptide permeases of Escherichia coli were performed, together with measurements of thermodynamic parameters of substrate binding to the dipeptide binding protein using isothermal titration calorimetry.

In benchmark test on 525 DNA-binding and 550 non DNA-binding proteins using jackknife validation, the present model achieved an ACC of 79.96%, MCC of 0.622 and AUC of 86.50%.

When we screened the Ci-binding proteins using a yeast two-hybrid assay, we have also identified importin α3, in addition to Rdx (see Materials and methods).

Researchers can capitalize on these characteristics to assess the affinity and specificity of DNA-binding proteins using fluorophore-labeled oligonucleotides.

Eph and ephrin 3'UTRs were scanned for known binding motifs for RNA-binding proteins using BioPerl [30].