Sentence examples for binding profiles were used from inspiring English sources

Following determination of the promoter region, the transcription factor binding profiles were used to scan TFBSs in promoter sequences.

ER binding (F15) profiles are used to predict breast cancer outcome [ 54].

To further analyze the respective GAG binding contributions of the core region and the C-terminal domain of CXCL12, mutations were introduced in both parts of the chemokine (see Fig. 1A) and their binding profiles were analyzed using the SPR assay (Fig. 4).

H-NS and Hha binding profiles were determined using a slight modification of the previously described ChIP-chip and ChAP-chip methods.

The vertebrate_h0.01 profile was used.

Comparison of binding profiles was performed using a novel algorithm that determines the similarity between TF motifs using the minimum Kullback Leibler divergence between all translations and reverse complementations of the multinomial distributions defined by the motifs.

A total of 175 familial binding profiles were generated and converted into position weight matrices (PWMs) by the PATSER software using the default settings [ 55].

To elucidate further T14 and T30 binding parameters, full displacement binding profiles were performed (Fig. 2E).

The binding profile is characterized using two metrics, the worst-fold affinity loss and the weakest binding affinity.

The systematic analysis of CRMs dissimilar between K562 and GM12878, demonstrated that K562 gene expression could not be explained using GM12878 CRMs if its TF binding profiles are too dissimilar from that of the K562 TF binding profiles.

The lead peptide-inhibitor, 6a, with high potency and good binding profile can be used as the basis for developing potent small molecule inhibitors against MDR variants of HIV.