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Genome-wide JunD TF binding profiles were generated for WKY and WKY. L Crgn2at two initial time-points.
Average Abf1 binding profiles were generated and centered over the Abf1 binding motif in the promoter regions of transcriptionally responsive and memory effect targets.
A total of 175 familial binding profiles were generated and converted into position weight matrices (PWMs) by the PATSER software using the default settings [ 55].
Binding profiles were generated as fragment pileup tracks in bedGraph format with pileup signal normalized per million reads (-B -SPMR).
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ChIP-chip and BrdU-chip experiments were performed and protein-DNA binding profiles and BrdU profiles were generated as described (Bermejo et al., 2009a, 2009b; Katou et al., 2003).
To predict possible EBNA-1 binding sites sequence patterns and hidden Markov model (HMM) profiles were generated using 13 non-redundant sequences from the EBV genome.
The scFv anti-p17/peptide interaction energy profiles were generated by decomposing the total binding free energies into residue-residue interaction pairs by the MM-GBSA decomposition process in the MM-PBSA program of AMBER12.
The protein profiles were generated by detection with Concanavalin A (Con A) and HRP-conjugated champedak galactose binding (CGB) lectin.
Overlays of the lane profiles were generated in Prism (GraphPad).
Seasonal heating profiles were generated for the reference building.
A total of 2501 virtual soil profiles were generated.
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