Sentence examples for binding pockets is an from inspiring English sources

Efficient determination of structural similarities between protein binding pockets is an important challenge in computational chemistry.

Determination of similarities between protein binding pockets is an important challenge in computer-aided drug design.

In drug design, the characterization of binding pockets is a key issue often addressed using molecular dynamics (MD).

This and earlier reports suggest that rational design of potent myosin II inhibitors based on the architecture of the blebbistatin binding pocket is an ineffective strategy.

In addition, targeting allosteric binding sites that are located outside the conserved ATP binding pocket is an emerging strategy that has generated very selective inhibitors [22,23].

The LxCxE-peptide binding pocket is a shallow groove within the B-domain, which mediates the interaction with proteins containing the LxCxE peptide motif [6].

In VrPPase:Pi, the extra Fo Fc electron density in the PPi-binding pocket is a phosphate ion, just 0.6 Å from the leaving group phosphate in VrPPase:IDP (Supplementary Fig. 2d).

Located above the receptor-binding pocket is a serine-to-asparagine change (shown in green) that possibly alters the regional surface topography at position 189 within antibody-binding site B. A serine-to-proline mutation at position 227 (shown in magenta) appears to marginally affect the HA surface features.

The in silico design of ligands binding to the protein surface instead of deep binding pockets is still a great challenge.

One common property of the NADH binding pockets is the presence of an aspartate or a glutamate that is able to interact with two hydroxyl groups of the adenine ribose moiety (Carugo and Argos 1997).

Extraction of the common structural features from the set of binding pockets is ideally performed using a multiple structure alignment method.