Sentence examples for binding pocket was defined from inspiring English sources

A 10 Å sphere around the centre of the binding pocket was defined as binding pocket for the docking runs.

The binding pocket was defined to include amino acid residues within a 4-Å reach around Site-2.

The binding pocket was defined as all the atoms within an 8-Å radius around the bound ligand, SR12813.

The binding pocket was defined to consist of residues A3, A15, G16, and A21, which locates roughly at the top of the 5′-terminal of the G-quadruplex.

They demonstrated that, when the protein structure and the general location of ligand binding pocket are defined (by cryo-EM or other structural biology approaches), modern computational tools are able to accurately identify correct binding configuration of the ligand.

The binding pocket is defined by amino acids within 3.5 Å of the D1 receptor agonist doxanthrine, which was used as environment 2 during the homology modeling procedure.

The binding pocket is defined as the set of residues with at least one atom with surface area in contact with an atom of the ligand.

The binding pocket is defined by amino acids within 3.5 Å from the D2 receptor agonist - R -2-OH-NPA, 32 which was used as environment 3 for induced fit during the homology modeling procedure.

Tournamille et al. found that a chemokine-binding pocket was defined by the close proximity of the first and fourth transmembrane domains of the DBG/DARC protein and also by the importance of the N-terminal extracellular region correlated to chemokines binding to the DBG protein [ 19, 20].

The presence of a well defined biotin model in the binding pocket was clearly visible in the initial Fobs– Fcalc electron density maps.

Then, a binding pocket was generated.