Sentence examples for binding peaks with high from inspiring English sources

We started with training the top 2000 ERα binding peaks with high scores (enrichments) by the ChIPMotifs, a total of 7 TFs were identified, including ERE, PAX6, PITX2, RORA, XBP1, PPARG and PPARA.

Binding peaks with FDR < 0.01 were defined as the ARF6 binding peak and used in further analyses.

We removed binding peaks that overlap with high occupancy target (HOT) regions [ 42, 43].

We implement a heuristic algorithm for direct binding (HADB) to determine the subset of ChIP-Seq peaks with high confidence binding sites, based on TFBS enrichment proximal to the peakMax, and to derive a PWM-specific scoring threshold.

This shows that most of the insulator binding peaks detected with DamID coincide with corresponding ChIP peaks (Fig. S3a).

Moreover, several significant TF binding peaks overlap with these enhancers.

At each of these promoters, the observed transcription factor binding peaks overlap with Hog1 promoter peaks.

To confirm the specificity of this effect, we repeated this analysis after dividing LADs into three classes: LADs without SU HW) binding peaks inside, LADs with at least one SU HW) binding peak inside and the 25% of LADs with the highest SU HW) peak density (Fig. 5a,b).

Binding peaks that overlap with Mock-IP signal were eliminated.

The weak peak with higher binding energy at 532.2 eV is attributed to the absorbed OH species on the sample surfaces [44].

The genes associated with FIE-HA+H3K27me3 FIE-HA+H3K27me3ly peand were used to carry out a gene ontology (GO) analysis on tH3K27me3atasets, tonlytermine whether there were any differences between the classes of genes with high-confidence FIE binding peaks (FIE-HA+H3K27me3) and the bulk of the H3K27me3 targets in the genome.